---------------------------------------------------- Subject: SMB Digest v05i35 SMB Digest December 5, 2005 Volume 05 Issue 35 ISSN 1086-6566 Editor: Ray Mejía (ray@helix.nih.gov) Note: Information about the Society for Mathematical Biology, including an application for membership, may be found in the SMB Home Page, http://www.smb.org/ . Access the Bulletin of Mathematical Biology, the official journal of SMB, at http://www.elsevier.com/locate/issn/00928240 . Inquiries about membership or BMB fulfillment should be sent to membership@smb.org Issue's Topics: SMB/SIAM LS06, July 31-Aug 3, Raleigh Society for Mathematical Biology Future Meetings CNS 2006 Call for Papers Open Problems - Mathematical & Computational Epidemiology DIMACS Workshop on The Epidemiology and Evolution of Influenza EMS Summer School 2006: Mathematical Models of the Heart UCSD Computational Neurobiology Graduate Training Postdoctoral/Graduate Fellowships, Theoretical Neuroscience, Columbia Tenure-Track Position, Laboratory of Biological Modeling, NIH Computer Sci Faculty Position(s), U of Vermont SMBnet Reminders ---------------------------------------------------- From: bmasmith@ncsu.edu Date: Thu, 1 Dec 2005 12:53:41 -0500 (EST) Subject: SMB/SIAM LS06, July 31-Aug 3, Raleigh SMB / SIAM Life Sciences annual meeting July 31-Aug 3, 2006 Brownstone Hotel & Conference Center, Raleigh, North Carolina, USA Themes Ecology, Environmental and Evolutionary Biology Genomics Imaging Neuroscience Structural Biology Modeling Diseases Biomathematics in Industry Biology Toxicology Stochastic effects in Biology Cell Motility Participation Deadline Date: December 30, 2005: Minisymposium proposals January 30, 2006: Abstracts for contributed and minisymposium presentations How to Participate: Individuals are requested to limit themselves to giving one talk. (This does not apply to invited plenary speakers). The chair of the organizing committee may make exceptions to this request. You are invited to contribute a presentation for this conference in one of the following formats. Minisymposia: A minisymposium consists of four 25-minute presentations, with an additional five minutes for discussion after each presentation. Prospective minisymposium organizers are asked to submit a proposal consisting of a title, a description (not to exceed 100 words), and a list of speakers and titles of their presentations using the Conference Management System available at: http://meetings.siam.org/start.cfm?CONFCODE=ls06 To ensure balance, we would prefer that a single individual not be the organizer of more than one minisymposium. It is recommended that the minisymposium organizer make the first presentation. Each minisymposium speaker should submit a 75-word abstract. The organizing committee will referee minisymposium proposals. The number of minisymposia may be limited to retain an acceptable level of parallelism in the conference sessions. For further minisymposium organizer and participant information, please visit: http://www.siam.org/meetings/guidelines/mini_guide.php Contributed Presentations in Lecture or Poster Format: Contributed presentations in lecture or poster format are invited in all areas consistent with the conference themes. A lecture format involves a 15-minute oral presentation with an additional 5 minutes for discussion. A poster format involves the use of non-electronic visual aids for mounting on a poster board. A poster session is two hours long. Each contributor must submit a title and a brief abstract not to exceed 75 words. Please submit contributed presentations in lecture or poster format using the Conference Management System available at: http://meetings.siam.org/start.cfm?CONFCODE=ls06 Acceptance Notification: Authors will be notified by e-mail in March. FURTHER INFORMATION ABOUT THE CONFERENCE CAN BE FOUND AT: http://www.siam.org/meetings/ls06/ and http://www.smb.org/meetings/index.shtml ---------------------------------------------------- From: "Panetta, Carl" Date: Fri, 2 Dec 2005 16:21:10 -0600 Subject: Society for Mathematical Biology Future Meetings Call for proposals to host the SMB annual meeting in 2008 or beyond http://www.smb.org/ If you are interested in hosting the SMB annual meeting in 2008 or later or would like more information about the possibility of hosting the meeting please e-mail Carl Panetta (Carl.Panetta@stjude.org) Chair of the Future Meetings committee. ---------------------------------------------------- From: CNS Date: Fri, 2 Dec 2005 08:24:23 -0700 Subject: CNS 2006 Call for Papers CALL FOR PAPERS, CNS*2006 SUBMISSION DEADLINE: February 6, 2006 midnight; submission open January 15, 2006 NOTE: Meeting dates have changed since the announcement at CNS*2005 Fifteenth Annual Computational Neuroscience Meeting CNS*2006 July 16 - July 20, 2006 Edinburgh, UK http://www.cnsorg.org CNS*2006 will be held in Edinburgh, UK from Sunday, July 16 to Thursday, July 20, 2006. The main meeting will be July 16-18 followed by two days of workshops on July 19 and 20. The meeting will take place in the heart of medieval 'Old Town' close to plenty of arts and entertainment. Edinburgh can be reached from Edinburgh or Glasgow International Airports. Submissions can include experimental, model-based, as well as more abstract theoretical approaches to understanding neurobiological computation. We especially encourage research that mixes experimental and theoretical studies. We also accept papers that describe new technical approaches to theoretical and experimental issues in computational neuroscience or relevant software packages. ---------------------------------------------------- From: Marcos Capistran Date: Mon, 28 Nov 2005 15:23:09 -0600 Subject: Open Problems - Mathematical & Computational Epidemiology Could you please give me a lead on where to find a list of open problems on mathematical and computational epidemiology? Thank you, Marcos Aurelio Capistrán Ocampo ---------------------------------------------------- From: Linda Casals Date: Wed, 30 Nov 2005 11:39:10 -0500 (EST) Subject: DIMACS Workshop on The Epidemiology and Evolution of Influenza DIMACS Workshop on The Epidemiology and Evolution of Influenza January 25 - 27, 2006 DIMACS Center, CoRE Building, Rutgers University Organizers: Catherine Macken, Los Alamos National Labs, cam@t10.lanl.gov Alan Perelson, Los Alamos National Labs, asp@lanl.gov Presented under the auspices of the of the Special Focus on Computational and Mathematical Epidemiology. Workshop Announcement: This workshop will explore the epidemiology and evolution of influenza. The persistence of influenza depends on its ability to evolve so that new strains and subtypes of the virus appear and old ones reappear. This constant evolution means that vaccines need to be updated frequently and that resistance to drug therapies can easily arise. The workshop will bring together public health practitioners, immunologists, epidemiologists, evolutionary biologists, mathematicians, statisticians, and computer scientists to explore the evolution and dynamics of influenza. Among the issues to be explored are the causes and consequences of patterns of immunological cross-reactivity, and the interactions with drug treatment and vaccination strategies. In addition, the applicability of SIR and agent based models to predict the spread of influenza, and the means of dealing with and planning for an influenza pandemic, will be discussed. Registration: Pre-registration deadline: January 18, 2005 Please see website for additional registration information. Information on participation, registration, accommodations, and travel can be found at: http://dimacs.rutgers.edu/Workshops/Influenza/ ---------------------------------------------------- From: Glenn Terje Lines Date: Thu, 01 Dec 2005 10:13:22 +0100 Subject: EMS Summer School 2006: Mathematical Models of the Heart Second Call: Simula Research Laboratory is organizing a summer school in Mathematical Models of the Heart. The event will take place at the arctic island Svalbard, 5-12 May 2006. For further information visit: http://home.simula.no/ems2006 The registration deadline is January 6. 2006 ---------------------------------------------------- From: Terry Sejnowski Date: Thu, 01 Dec 2005 14:33:25 -0800 Subject: UCSD Computational Neurobiology Graduate Training DEADLINE: DECEMBER 15, 2005 COMPUTATIONAL NEUROBIOLOGY GRADUATE PROGRAM Department of Biology - University of California, San Diego http://www.biology.ucsd.edu/grad/CN_overview.html The goal of the Computational Neurobiology Graduate Program at UCSD is to train researchers who are equally at home measuring large-scale brain activity, analyzing the data with advanced computational techniques, and developing new models for brain development and function. Candidates from a wide range of backgrounds are invited to apply, including Biology, Psychology, Computer Science, Physics and Mathematics. The three major themes in the training program are: 1. Neurobiology of Neural Systems: Anatomy, physiology and behavior of systems of neurons. Using modern neuroanatomical, behavioral, neuropharmacological and electrophysiological techniques. Lectures, wet laboratories and computer simulations, as well as research rotations. Major new imaging and recording techniques also will be taught, including two-photon laser scanning microscopy and functional magnetic resonance imaging (fMRI). 2. Algorithms and Realizations for the Analysis of Neuronal Data: New algorithms and techniques for analyzing data obtained from physiological recording, with an emphasis on recordings from large populations of neurons with imaging and multielectrode recording techniques. New methods for the study of co-ordinated activity, such as multi-taper spectral analysis and Independent Component Analysis (ICA). 3. Neuroinformatics, Dynamics and Control of Systems of Neurons: Theoretical aspects of single cell function and emergent properties as many neurons interact among themselves and react to sensory inputs. A synthesis of approaches from mathematics and physical sciences as well as biology will be used to explore the collective properties and nonlinear dynamics of neuronal systems, as well as issues of sensory coding and motor control. Requests for application materials should be sent to the University of California, San Diego, Division of Biological Sciences 0348, Graduate Admissions Office, 9500 Gilman Drive, La Jolla, CA, 92093-0348 or to [gradprog@biomail.ucsd.edu]. The deadline for completed application materials, including letters of recommendation, is December 15, 2005. For more information about applying to the UCSD Biology Graduate Program. A preapplication is not required for the Computational Neurobiology Program. http://www.biology.ucsd.edu/grad/admissions/index.html ---------------------------------------------------- From: Ken Miller Date: Wed, 30 Nov 2005 14:25:21 -0500 Subject: Postdoctoral/Graduate Fellowships, Theoretical Neuroscience, Columbia FULL INFO: http://www.neurotheory.columbia.edu PLEASE DO NOT USE 'REPLY'; FOR MORE INFO USE ABOVE WEB SITE The Center for Theoretical Neuroscience at Columbia University in New York City is accepting applications for graduate students and postdoctoral fellows. The faculty include: Larry Abbott, Co-Director http://neurotheory.columbia.edu/~larry Ken Miller, Co-Director http://neurotheory.columbia.edu/~ken Liam Paninski http://www.stat.columbia.edu/~liam Ning Qian http://brahms.cpmc.columbia.edu/ Stefano Fusi (Senior Research Associate) http://www.cns.unibe.ch/~fusi/ Bill Bialek (Visiting one day per week) http://www.princeton.edu/~wbialek/wbialek.html Columbia has a strong research program in experimental neurobiology (http://cpmcnet.columbia.edu/dept/neurobeh/nb_phd_res_area.html) and in computational biology (http://www.c2b2.columbia.edu/). The Center is a highly interactive environment for bringing theoretical approaches to Neuroscience. For postdoctoral fellowships, applicants should have a strong background and education in theoretical neuroscience or biology or in a quantitative field such as mathematics, theoretical or experimental physics, engineering, or computer science, and commitment to a future research career in neuroscience. Prior biological or neuroscience training is not required. TO APPLY, please send a curriculum vitae, a statement of previous research and research goals, up to three relevant publications, and have three letters of recommendation sent, to the address below. Applications are due by Jan. 30, 2006. For graduate fellowships, apply to an existing Ph.D. program at Columbia (details on our web site). Separately, notify us that you wish to be considered for a fellowship in Theoretical Neuroscience by sending email, to the address below, with a letter explaining which program you've applied to, why you intend to pursue Theoretical Neuroscience in your graduate work, and what background you bring to it. Please also include a copy of your application materials, and ask your referees to send us copies of their letters. Note that the priority application deadline for most programs is either Jan. 3 or (for engineering) Dec. 15. Application materials may be sent by email to Andrew Fink, andrew@neurotheory.columbia.edu; please include your name and "postdoctoral fellowship, CTN" or "graduate fellowship, CTN" in the subject line. Alternatively materials may be sent by surface mail (address on our web site). ---------------------------------------------------- From: Arthur Sherman Date: Wed, 30 Nov 2005 17:31:55 -0500 Subject: Tenure-Track Position, Laboratory of Biological Modeling, NIH NIDDK Tenure-Track Investigator: Modeling of Cell Biological and Physiological Systems The National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), National Institutes of Health (NIH), Department of Health and Human Services, invites applications for tenured or tenure track positions in the Laboratory of Biological Modeling. The Laboratory is currently comprised of scientists who use computational approaches to understand cell biological and physiological systems. Specific areas of research interest will include mathematical modeling at the subcellular, cellular, tissue and system levels. Excellent computational facilities and resources for rapid achievement of research goals are available. LBM is in close proximity in particular to the NIDDK Computational Chemistry Core Facility, engaged in molecular modeling. The position offers unparalleled opportunities for interdisciplinary collaboration within NIDDK and throughout NIH. For further information about NIDDK, see http://www.niddk.nih.gov. Candidates must have a Ph. D., M. D., or equivalent degree in the physical or biomedical sciences. He or she should have an outstanding record of research accomplishments in mathematical modeling and will be expected to propose and pursue an innovative and independent research program. Applicants should send a curriculum vitae and list of publications, copies of three major publications, a plan for future research, and three letters of reference to Dr. Robert Tycko, Chair of the Search Committee, Laboratory of Chemical Physics, Building 5, Rm 112, 5 Memorial Drive, NIH, Bethesda, MD 20892-0520, tel: 301-402-8272, fax: 301-496-0825, email: tycko@helix.nih.gov. (A closing date has not been set, but it would be best to apply before the end of January, 2006.) HHS and NIH are Equal Opportunity Employers Position Description: The successful candidate will establish an independent group with research interests focused on mathematical modeling at the subcellular, cellular, tissue, or organism levels. Other members of the Laboratory of Biological Modeling (http://lbm.niddk.nih.gov) conduct basic research on a wide variety of topics including insulin secretion (A. Sherman), insulin action (A. Sherman, C. Chow), metabolism (K. Hall), adipocyte differentiation (V. Periwal), calcium homeostasis (A. Sherman), and neuroscience (C. Chow), all relevant to diabetes and obesity. Interaction is expected with experimental laboratories or other computational groups in NIDDK or other NIH institutes. ---------------------------------------------------- From: Xindong Wu Date: Mon, 5 Dec 2005 14:42:46 -0500 (EST) Subject: Computer Sci Faculty Position(s), U of Vermont Faculty Position(s) in Computer Science at the University of Vermont The Department of Computer Science in the College of Engineering and Mathematical Sciences at the University of Vermont invites applications for one (and possibly two) tenure-track faculty, commencing with the 2006-07 academic year, at the Assistant Professor level. The Department of Computer Science offers Master's and PhD programs in the Graduate College, and undergraduate programs in the College of Engineering and Mathematical Sciences and the College of Arts and Sciences, as well as a joint program with the School of Business Administration. Our existing faculty in Computer Science are involved in the forefront of research in computational biology, data mining, and distributed systems, that complements University-wide initiatives in computational sciences, energy/environment, and life sciences, and contributes towards the college-wide spire of excellence in Intelligent and Complex Systems in the College of Engineering and Mathematical Sciences. Priority consideration will be given to applicants with scholarly interests and experience that further strengthen our existing research and teaching activities in these three thrust areas. Candidates for the possible second position will need a demonstrated research interest in computational biocomplexity. We are especially soliciting applications from scholars who will develop innovative approaches to computer science education geared toward preparing the national leaders. We encourage and support faculty diversity, thus, the successful candidates will have an understanding and commitment to diversity. Candidates should have an earned doctorate in an appropriate discipline, a proven record of scholarly activities and the ability to teach multiple courses in a traditional computer science undergraduate curriculum. Successful candidates will be expected to make significant and balanced contributions to both teaching and research, including the development of a nationally-respected and externally funded research program. Current teaching responsibilities typically consist of three computer science courses per year with average enrollments of 25 students. Please upload your application at the University's recruiting website (https://www.uvmjobs.com, using the Search Postings link with Job Requisition Number 031132 to find the position) with a curriculum vitae, a statement of teaching experience and interests, a statement of research interests and aspirations to; and arrange for at least three letters of reference to be sent to: Faculty Search Department of Computer Science University of Vermont 33 Colchester Avenue, 351 Votey Building Burlington, VT 05405 USA Complete applications received by January 23, 2006 will be fully considered. For more information about the Department, the College, and the University please see http://www.cs.uvm.edu or email to cssearch@cs.uvm.edu. The University of Vermont is an Affirmative Action/Equal Opportunity employer and encourages applications from women and members of minority groups. ---------------------------------------------------- Subject: SMBnet Reminders To subscribe to the SMB Digest please point your browser at http://list.auckland.ac.nz/mailman/listinfo/math-smbnet and complete the subscription information. Alternatively, if you prefer to use e-mail, send mail to LISTSERV@listserv.biu.ac.il with "subscribe SMBnet Your Name" in the body of the mail (omit the quotes). After you subscribe, you will receive a greeting with additional information. Submissions to appear in the SMB Digest may be sent to SMBnet@smb.org Items of interest to the mathematical biology community may be submitted for inclusion in the SMBnet archive. See instructions at: http://smb.org/publications/SMBnet/pubs/fyi . The SMB Digest is also available on the SMB Home Page at http://smb.org/publications/SMBnet/digest/ The contents of this publication may be reproduced in whole or in part with attribution. End of SMB Digest **************************************************** ----------------------------------------------------